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基因疗法核心的不可预测病毒The Unpredictable Virus at the Core of Gene Therapy

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药丸里的病毒a virus inside a pill

在最近几个月,有关几起令人痛心的病例的消息被公布,这些病例凸显了基因疗法的风险——基因疗法通过向患者细胞输送DNA来治疗疾病。所有这些病例有一个共同点,乍一看并不明显。

In recent months, news came out about several distressing cases that have underscored the risks of gene therapy, which delivers DNA to a patient’s cells to treat disease. All of these cases have one thing in common that’s not apparent at first glance.

在中国,一名参加基因疗法临床试验的儿童因急性呼吸窘迫综合征死亡,这种情况下肺部会积聚液体,导致氧气无法进入。在中国另一项临床试验中,一名儿童因小血管形成血栓而死亡,这可能干扰了氧气向肾脏和大脑等器官的输送。今年早些时候,研究人员报告称,一名在费城接受治疗的5岁男孩出现了脑肿瘤,这很可能是由基因疗法引起的。(目前他状况良好。)在这些病例中,所使用的基因疗法都依赖于一种多功能但不可预测的病毒类型:腺相关病毒,简称AAV。

A child in China, enrolled in a clinical trial for gene therapy, died of acute respiratory distress syndrome, in which fluid builds up in the lungs and oxygen cannot enter. In a separate clinical trial in China, a child died after clots formed in their small blood vessels, likely disrupting the delivery of oxygen to organs such as the kidneys and brain. And earlier this year, researchers reported that a 5-year-old boy treated in Philadelphia had a brain tumor that was likely caused by gene therapy. (He’s doing okay now.) In each of these cases, the gene therapies relied on a versatile but unpredictable type of virus: adeno-associated virus, or AAV for short.

AAV是全球许多最成功的基因疗法的“工作马”。科学家对其进行改造,使其能够将特定基因的功能拷贝输送到人体内,但自身不能复制且不具传染性。这些疗法已将一种脊髓性肌肉萎缩——曾是导致婴儿死亡的最主要遗传性疾病——转变为可存活的状况,并已获批用于治疗一种毁灭性的酶缺乏症、肌肉萎缩性疾病和血友病等疾病(仅举几例)。

AAVs are the workhorses of many of the most successful gene therapies in the world. Scientists modify them so that they can deliver a working copy of particular genes to the body, but cannot replicate and aren’t infectious. These treatments have transformed a form of spinal muscular atrophy—once the genetic disorder most responsible for infant mortality—into a survivable condition, and have been approved for a devastating enzyme deficiency, muscle-wasting disease, and hemophilia, to name a few.

AAV可能导致的严重后果虽然罕见,但确实存在风险。到目前为止,这些疗法仅在小规模患者群体中使用——最常用的一种自2019年以来已被约5000名儿童接受——且主要针对那些显著影响或缩短人们寿命的疾病。但以AAV为基础的基因疗法正被探索用于治疗更为普遍的疾病,包括心脏病、高血压,甚至可能是阿尔茨海默病。随着基因疗法的使用增加,其出现严重问题的情况也可能随之增多。

The terrible outcomes AAVs can cause are rare, but they’re a real risk. So far, the treatments have been used in small patient groups—the most commonly given one has been received by about 5,000 children since 2019—and focused on diseases that dramatically affect or shorten people’s lives. But AAV-based gene therapies are being explored for prevalent ailments, including heart disease, high blood pressure, and perhaps even Alzheimer’s. As the use of gene therapy increases, so might the instances in which it goes dramatically wrong.

参与基因疗法的改造型AAV每个都含有一条单链DNA。该链的一部分驱动病毒进入细胞的能力,另一部分则是正在递送的有益人类基因。病毒成分比治疗基因更可能不可预测,并可能引起副作用。例如,有时AAV不会停留在细胞内,而是将自身插入患者的遗传密码。这似乎正是发生在5岁男孩身上的情况——他因脑肿瘤而病发,AAV将自身插入了他DNA的一段,随后该段产生了癌症。

The modified AAVs involved in gene therapy each contain a single strand of DNA. One portion of that strand drives the virus’s ability to get inside cells, and another is the helpful human gene that’s being delivered. The viral components are more likely than the therapeutic gene to be unpredictable and can cause side effects. On occasion, for instance, instead of hanging around within cells, AAVs insert themselves into the patient’s genetic code. This seems to have been what happened to the 5-year-old who developed a brain tumor—the AAV put itself into a part of his DNA that then produced the cancer.

男孩在13个月大时接受基因疗法治疗的疾病是 Hurler 综合征,这种病会进行性致残。该综合征可能导致骨骼、心脏、肺部和肝脏出现问题,并影响认知发展;预期寿命较短。许多基因疗法针对的是那些若能获得一份有效的重要基因副本,就能接近健康生活的儿童。“我们应该记得我们正在谈论什么疾病,”俄罗斯喀山联邦大学研究基因疗法的科学家阿尔伯特·里扎诺夫告诉我。

Hurler syndrome, the condition the boy was being treated for when he received the gene therapy at 13 months old, is progressively debilitating. The syndrome can cause problems for the skeleton, heart, lungs, and liver, and affect cognitive development; life expectancy is short. Many gene therapies are geared toward children for whom a working copy of a vital gene would promise something closer to a healthy life. “We should remember what diseases we are talking about,” Albert Rizvanov, a scientist at Kazan Federal University in Russia who studies gene therapy, told me.

对于这些患者,基因疗法可能看似显而易见的选择。但父母仍需权衡治疗的潜在益处与真实风险,包括致命并发症。

For such patients, gene therapy may seem like an obvious choice. But parents are still left weighing the potential benefits of treatment against the real risks, including fatal complications.

乔·考尔和她的丈夫里奇·迪乔治不久前就面临着这个问题。他们的儿子瑞安出生于2019年,体重不足六磅,到他三个月大时,他们开始担心他的视力。瑞安的儿科医生怀疑这只是近视,乔·考尔告诉我,她曾在网上广泛撰写过自己家族的故事,但她的“妈妈直觉”启动了。她为儿子预约了眼科医生,医生发现瑞安两只眼睛都有白内障。瑞安的整体生长也未达标,他错过了许多发育里程碑。到15个月大时,他被诊断出患有科克恩综合征的一种严重形式——一种导致进行性肌肉无力和神经损伤的遗传病。

Jo Kaur and her husband, Richie DiGeorge, faced this question not too long ago. Their son Riaan was born in 2019 weighing less than six pounds, and by the time he was three months of age, they were concerned about his eyesight. Riaan’s pediatrician suspected it was just near-sightedness, Kaur, who has written extensively online about her family’s story, told me, but her “mom radar went off.”She secured an appointment with an ophthalmologist who found that her son had cataracts in both his eyes. Riaan’s overall growth also wasn’t on track, and he was missing milestones. At 15 months old, he was diagnosed with a severe form of Cockayne syndrome, a genetic condition that causes progressive muscle weakness and nerve damage.

这一诊断意味着瑞安的问题不仅仅是眼睛或生长稍慢,而是他的生命可能很短——也许只有五到七年。他能翻身并把家人拉近拥抱,但到2025年底,也就是他六岁的时候,他仍然无法独立坐超过几分钟,也无法独立站立或行走,更不能自己进食。他个子如此之小,以至于仍然穿着18个月婴儿的衣服。

This diagnosis meant not just that Riaan had problems with his eyes or was growing a little slowly, but that his life would likely be short—perhaps just five to seven years. He could roll and pull his family in for cuddles, but by the time he was 6 years old, at the end of 2025, he was still unable to sit independently for more than a few minutes at a time, or stand or walk independently, or feed himself. He was so small that he was still wearing clothes for 18-month-olds.

到那时,瑞安已经失去了大量神经组织。他的大脑体积只有同龄儿童正常水平的约50%。但乔·考尔和迪乔治多年来一直与科学家密切合作,致力于开发针对科克恩综合征的基因疗法。他们的希望是阻止或至少减缓瑞安神经细胞的流失。“因为科克恩综合征是神经退行性疾病,即使瑞安只是保持目前的状态一段较长时间,对我们来说也意义重大,”乔·考尔说。

By then, Riaan had lost a lot of nervous tissue. His brain size was about 50 percent of what would be typical for a child his age. But Kaur and DiGeorge had worked closely with scientists for years to develop a gene therapy for Cockayne syndrome. The hope was to stop or at least slow Riaan’s loss of nerve cells. “Because Cockayne syndrome is neurodegenerative, even an extended period in which Riaan simply remains where he is now would be enormously meaningful to us,” Kaur said.

开发治疗瑞安的科克综合征的研究人员曾进行小鼠实验,以确定该药物是否安全以及是否有效。一些动物出现了肝损伤的迹象,但它们的寿命也更长了。考尔和她的丈夫一直参与无数次会议,并及时了解所有进展。对风险有如此深入的了解增加了让瑞安接受治疗这一决定的分量。“我们读了所有论文,我们知道科学原理,”她说,“但你仍然在为孩子做一个重大决定。”她和丈夫主要担心治疗的安全性。

The researchers developing a Cockayne-syndrome treatment for Riaan had done mouse experiments to determine whether the medication was safe and whether it worked. Some of the animals had signs of liver damage, but they also lived longer. Kaur and her husband had been involved in countless meetings and stayed up-to-date on all of the developments. Knowing the risks so intimately increased the weight of the decision to allow Riaan to receive the treatment. “We’d read all the papers, we knew the science,” she said, “but you’re still making a huge decision for your child.”She and her husband were primarily concerned about the treatment’s safety.

最终,今年四月,他们决定继续进行这种疗法。瑞安将成为全球首个接受这种治疗科克综合征的儿童。外科医生在他的头骨上钻了一个小孔,插入导管,并在几分钟内将基因疗法输送给他。夜幕降临时,正如考尔在她对瑞安手术过程的亲自记述中所写,她忍住打喷嚏的冲动,因为他正睡在她的手臂上,躺在医院里。一切看起来都非常脆弱,她不敢动一动。

Ultimately, this past April, they decided to go ahead with the therapy. Riaan would be the first child in the world to receive this treatment for Cockayne syndrome. Surgeons created a small hole in his skull, inserted a catheter, and within minutes delivered the gene therapy to him. When night came, as Kaur wrote in her own account of Riaan’s procedure, she fought the urge to sneeze as he slept on her arm in the hospital. Everything seemed very delicate, and she dared not move.

他的头必须保持抬高,而且“他身上有那么多导线,”她告诉我。“我不想吵醒他。”第一个成功的基因疗法是在1990年进行测试的,当时使用了一种无复制能力的鼠病毒版本。但这种病毒不易进入所有细胞,因此科学家一直在寻找其他可尝试的病毒。其中一种是腺病毒——它之所以是一个有吸引力的选择,部分原因在于它能够向大量细胞输送功能正常的基因。

His head had to stay elevated and he “had so many wires,” she told me. “I didn’t want to wake him.”The first successful gene therapy, tested back in 1990, used a nonreplicating version of a mouse virus. But that virus doesn’t readily get into all cells, so scientists kept looking for others to try. One was adenovirus—an attractive option in part because it could deliver working genes to a high number of cells.

但1999年,一名叫杰西·格林辛格的18岁青年在接受使用腺病毒治疗其罕见代谢疾病的疗法后不久,因严重的免疫反应而死亡。人们认为格林辛格经历了一种急性呼吸窘迫综合征,这种综合征曾导致中国的一名患者死亡。

But in 1999, an 18-year-old named Jesse Gelsinger died shortly after having a severe immunological response to a therapy that used adenovirus to treat his rare metabolic disorder. Gelsinger is believed to have experienced the same acute respiratory distress syndrome that killed one of the patients in China.

在那次最近的试验中,中国公司汇达基因治疗公司正在使用基因疗法治疗杜氏肌营养不良。在许多情况下,杜氏肌营养不良导致的身体虚弱会导致儿童在青少年时期死亡,那些孩子可能从基因疗法中受益的家庭一直在推动这种疗法。在美国,由赛尔蒂公司生产的另一种基于AAV的杜氏肌营养不良基因疗法颇具争议,部分原因是人们担心它可能对患者帮助不大。

In that recent trial, the Chinese company HuidaGene Therapeutics was using gene therapy to treat Duchenne muscular dystrophy. In many cases, the body weakness caused by Duchenne leads to death during a child’s teenage years, and families whose kids might benefit from gene therapy have been pushing for it. In the United States, a different AAV-based gene-therapy treatment for Duchenne, made by the company Sarepta, has been controversial in part because of concerns that it may not actually do enough for patients.

但它也与死亡病例有关:去年夏天,美国食品药品监督管理局报告称,正在调查几名接受赛尔蒂疗法的患者死于急性肝衰竭一事,这是一种已知风险。(在死亡事件发生后,汇达基因在一份公开声明中向患者家属表示哀悼,并重申其关注患者安全。赛尔蒂暂停了向某些患者运送治疗。)进入血液的AAV非常擅长到达肝脏,在那里它们会被过滤掉并可能积累。

But it has also been associated with deaths: Last summer, the FDA reported that it was investigating after several patients receiving Sarepta’s therapy succumbed to acute liver failure, a known risk. (After the deaths, in a public statement, HuidaGene extended condolences to the family and reiterated its focus on patient safety. Sarepta paused shipments of treatment for certain patients.) AAVs delivered into the bloodstream are very good at reaching the liver, where they’re filtered out and can accumulate.

因此,经过改造的病毒可能更难到达其他器官系统和组织,包括肌肉。为了到达身体那些较难到达的部位,科学家有时会增加给予的治疗剂量。基因疗法中病毒颗粒的剂量差异极大,一种治疗的剂量可能是每公斤体重5000亿个功能性病毒颗粒,而另一种则是300万亿个。(常用药物的剂量通常集中在一个更窄的范围内。)

As a result, the engineered viruses can have a harder time reaching other organ systems and tissues, including muscle. To get to those harder-to-reach parts of the body, sometimes scientists increase the amount of treatment they give. The doses of viral particles in gene therapy can vary so widely that one type of treatment might have a dose of 500 billion functional viral particles per kilogram, and another 300 trillion. (The doses in commonly used drugs tend to occupy a much narrower range.)

许多患者除了冒险接受更大剂量外别无选择,参与发现一种常用AAV并目前担任麻省眼耳医院基因疗法中心主任的卢克·范登伯格告诉我。“替代方案可能意味着重新开发一种新的、经过修改的基因疗法,”他说。

Many patients have few other options than to risk a bigger dose, Luk Vandenberghe, who was involved in the discovery of a commonly used AAV and now directs the gene-therapy center at the Massachusetts Eye and Ear Infirmary, told me. “The alternatives can mean restarting development with a new and modified gene therapy,” he said.

研究人员一直在尝试测试不同的AAV变体,并改造病毒的外壳,使其能够到达人体内的目标组织。但这也可能改变身体的反应。一年前,一名儿童在一项临床试验中死亡,该试验使用了一种经过外壳设计的AAV,旨在帮助其到达大脑并为一种先天性癫痫疾病提供治疗。该试验背后的公司Capsida暂停了临床试验,几个月后表示,该儿童在输注后出现了脑肿胀。

Researchers have been trying to test different variants of AAV and engineering the viruses’ shells to get them to reach desired tissues in the body. But that, too, can change how the body reacts. A year ago, a child died in a clinical trial that used an AAV designed with a shell to help it reach the brain and deliver treatment for a congenital seizure disorder. The company behind the trial, Capsida, paused the clinical trial and a few months later said that the child had experienced brain swelling following the infusion.

5月,该公司宣布已终止该试验。(该公司“一直在进行广泛的非临床工作,以了解导致该结果的原因”,并将把研究结果纳入未来工作中,Capsida发言人凯瑟琳·卡莱尔·史密斯在一封电子邮件中写道。)尽管基因疗法存在风险,但接受该疗法的人数不断增加,也意味着许多人已从中受益,且没有令人担忧的副作用。“谨慎当然始终是首要考虑,但我认为,对许多父母来说,基因疗法的前景超过了不采取行动的风险,”里安的母亲考尔告诉我。

In May, it announced that it had closed the trial. (The company has “been conducting extensive nonclinical work to understand what led to the outcome” and will incorporate its findings into future work, Katherine Carlyle Smith, a Capsida spokesperson, wrote in an email.) Despite the risks of gene therapy, the growing number of people who have received it also means that many people have benefited, without concerning side effects. “Caution is of course always top of mind, but I think the promise of gene therapy overwhelms the risks of not taking action for a lot of parents,” Kaur, Riaan’s mother, told me.

她和丈夫对给里安进行基因疗法感到特别谨慎,正因他患有危及生命的疾病:“我们希望维持并保留他目前拥有的生命和幸福,”她说。

She and her husband felt especially cautious about giving Riaan gene therapy, precisely because he had a life-limiting disease: “We want to maintain and preserve the life and happiness that he currently has,” she said.

目前,里安正在逐渐减少免疫抑制剂的使用,并受到密切监测。与此同时,考尔正在观察该疗法可能有效的迹象。他可以独自坐在沙发边缘。他仍需要支撑才能站立或行走,但他更愿意尝试了。考尔知道这些观察只是个案证据,但里安的物理治疗师也注意到了这些变化,她说。他也变得更善于表达了——这一结果让考尔感到惊讶。“他很少说‘妈妈’,现在他整天都在说……‘妈妈妈妈,’”她说。“听到这个很美好。”

Currently, Riaan is being tapered off his immunosuppressants and monitored closely. In the meantime, Kaur is observing signs that the therapy might be helping. He can sit by himself on the edge of the couch. He still needs support to stand or walk, but he wants to try more often. Kaur knows these observations are anecdotal, but Riaan’s physical therapist has also noticed the changes, she said. He has become more expressive, too—an outcome that surprised Kaur. “He would rarely say ‘mama,’ and now he says it all day long … ‘ma-ma-ma,’” she says. “It’s beautiful to hear.”